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Igor Grigoriev
Institute in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical industry. He … Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. … Igor … genome sequence of  Schizophyllum commune . Nat Biotech.  2010; 28: 957-963. Worden AZ et al. Green evolution and …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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JGI Portals
Our data platforms are a key resource for the broader scientific … databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to … to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. … …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE … from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …
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JGI announces final round of 2022 Functional Genomics awardees
Twice each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential … genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and …
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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected for … very excited to start working with this years’ crop of CSP recipients, over half of which are first-time PIs on a … CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s Office of Biological and …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler … — so we head there for a sense of what this supercomputing looks like. …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, … C., Smoke, C., Meyer, C., Højlund, K., Yi, Z., & others (2010). Proteomics analysis of human skeletal muscle reveals …
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Nigel Mouncey
… from almost 20 years in the Industrial Biotechnology private sector, as well as research expertise in secondary … DOE National Laboratories, the Community Science Program (CSP), and external collaborations. The Director ensures the … J Ind Microbiol Biotechnol. 46:273-279 Krajewski V et al. 2010. Metabolic engineering of Gluconobacter oxydans for …
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Computationally Classifying Fungal Lifestyles
As a proof of concept, researchers developed an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of … enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward …
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A Step Toward Controlling Soybean Rust
The United States  is the world’s leading soybean producer , and soybeans … causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could … plant genome , and JGI  published its genome sequence in 2010.       … The U.S. Department of Energy Joint Genome …
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JGI Announces 2025 New Investigator Portfolio
Darcy McRose, Ranjani Murali, Ernie Osburn, Ravikumar Patel, Guy Polturak, Marlis Reich, Taniya RoyChowdhury and … researchers) Each year, the JGI searches for novel research projects from PIs who have not led any previously accepted proposals.  The New Investigator call , part of our  Community Science Program , allows …
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