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Publication Policy
… The purpose of this policy is to establish communication norms around JGI contributions, ensure … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … A primary purpose of this project is to bring educators from …
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Publications
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … ACADEMIC, NON-PROFIT or COMMERCIAL PROPOSALS with MULTIPLE COLLABORATORS: The submitting researcher’s home …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the … The DNA Synthesis Program plays a central role in advancing … in synthetic biology by synthesizing genes, pathways, and whole chromosomes for bioenergy and bioproduct applications. …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … it was a biosynthetic pathway, then you would sequence the whole thing, and you’d use that to then seek out the other … amino acid out of solution and stick another amino acid or multiple other amino acids onto it to create a small …
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Natural Prodcast Episode 11: Marnix Medema
… Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … encoded by them. Well, they had come out over actually multiple decades of time. But still to be able to use those … selfishly. Of course, this was also very important for the whole community, so. This resonated with a lot of people, …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, … on project Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to … candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The “Great Plate-Count … or phenotype of interest, prior to and in conjunction with whole genome sequencing. …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call … researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. …
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Multiple whole-genome alignments without a reference organism
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