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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … across JGI Plant Flagship speciesspecies, using deep-coverage RNA-seq analyzed in a consistant computational … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … Proposal DOIs can be found at the top of the proposal info page on the JGI Genome Portal. You can navigate to the …
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Natural Prodcast Episode 17: Cassandra Quave
… of ground – her book, bioprospecting vs biopiracy, early stage drug discovery in general, and a possible data-driven … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … naturalprodcast.com . Special thanks, as always, to my co-host Alison Takemura. If you like Alison, you want to hear …
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Microbiome Data Science Team
… coupled with recent computational technology advances in management, processing and visualization of “big data,” and … of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
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Natural Prodcast Episode 2: The Primer, Part 2
… maybe obvious or notable. We are still in – not an early stage. I think we can identify most secondary metabolism … I think is also really interesting. Because glycosides are shaped so differently from polyketides. At least I mean, I … at naturalprodcast.com Special thanks, as always, to my co-host, Alison Takemura. <woohoo> If you like Alison, and want …
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Partnerships Development Team
… works closely with the Berkeley Lab Intellectual Property Office to facilitate these new interactions.  The PDT enables industry engagement through three primary routes:  … The CSP provides … license Lab inventions generated through the CRADA.  … New Leaf Symbiotics is partnering with the JGI and Berkeley Lab …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them … public datasets.  … The Integrated Microbial Genomes &amp; Microbiomes system ( IMG/M ) supports the annotation, …
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Publications
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … and bioenergy development. … EcoFABs:  For studying microbe-host (or plant-microbiome) interactions under controlled … experimental manipulations while being simultaneously imaged and sampled.  Combining collected metabolomics data …
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Natural Prodcast Episode 10: A Primer on Genome Mining
Because we always need new antibiotics. We need new cancer agents. We need treatments for humans. And it just so … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … metabolism genes don’t look like the genes in their host. And so, sometimes those kinds of things get lost in …
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Plant-Microbial Interactions Group
… in a myriad of bacterial strains, whereby they can modulate host metabolism, gene expression and phenotype. We have recently identified resident bacteriophages (viruses infecting bacteria) in the plant … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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