Results
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI together aim to publish the first analysis of data produced at the facility, provided …
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… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … Matt Escobar, CSU San Marcos "This was our first paper . It was definitely interesting going through …
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… back for our second season of Natural Prodcast. This first episode up is another primer episode. These are … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … what looked to be novel biosynthetic gene clusters, like completely new things that we haven’t seen before. And so …
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… sequencing products below. In addition, JGI will submit raw sequence data to SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the MassIVE … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …
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The program also collaborates with isolate collections to complete large-scale sequencing projects, including 10,000 … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … resequencing, RNA sequencing and epigenomics. Expansion of sequence space: The JGI generates reference genomes from …
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The Metagenome Program uses advanced sequencing technologies to … assembly and binning have enabled reconstruction of complete or near-complete population genomes directly from … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …
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When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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Procedure GenTegra RNA Preparation Procedure … 1) Complete Sample Metadata form Sample metadata is collected … Project Manager (PM) a list of organism names (or for metagenomes, sample names). Need help naming your organisms? … pipelines. You will receive automated emails as raw sequence data becomes available, and as analysis is …
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… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … proposals within the focused topic areas that can be completed on an accelerated timeline as compared with the … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …
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… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … based on scientific need. Proposals are considered complete when all agreed-upon projects are complete. This …
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