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… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. A primary … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis … the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific …

… technology in order to enhance the quality of single-cell genomes and directly link functional information … that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to improve …

… to DOE mission is appropriate. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project …

… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in …

… any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … and delays on the work. The transfer of a proposal from one commercial institution to a new commercial …

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … really the same kind of thing. Before the age of genome sequencing, we had to basically break up the pieces of DNA …