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… such effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of … following the guidelines below.  … If you use data from 3 or fewer JGI proposals, include those DOIs in the auspice …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of …

… proposals within the focused topic areas that can be completed on an accelerated timeline as compared with the … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … staff of the participating User Facilities, as well as DOE. Nearly all LOIs are accepted for full proposal submission, …

… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … regions (Alignment fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering … nearly 18% of all existing species. Additionally, the complete linkage clustering made it possible to confidently …

… technology in order to enhance the quality of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI uniquely offers the first …

We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning … structure and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …

… strain-level genetic variation to ecological niche adaptations.  Single cell sequencing approaches are also used … The program also collaborates with isolate collections to complete large-scale sequencing projects, including 10,000 … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, …

… the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE … and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific …

… things off this time around, talking about a subject that’s near and dear to my heart. And that is, we wanted to do a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … what looked to be novel biosynthetic gene clusters, like completely new things that we haven’t seen before. And so …