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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … Please include the appropriate Auspice Statement in any external publications, and include proposal Award DOIs following …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … early will prevent disruption and delays on the work. The transfer of a proposal from one commercial institution to a …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …
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Publications
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Parallel Evolution of Truncated Transfer RNA Genes in Arachnid Mitochondrial Genomes
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … do some sort of slightly novel chemistry. That’s just how evolution works. So if secondary metabolism is really …
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Protocols
Find protocols provided by JGI and the JGI user community … preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here … … Tips for High Molecular Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … It The program fosters collaboration with U.S. and international scientists to drive innovations that align with … cutting-edge research in synthetic biology by synthesizing genes, pathways, and whole chromosomes for bioenergy and …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … And I found her review in natural product reports on the evolution of genome mining and microbes with Mohammad … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … and virus-microbe interactions, over ecological and evolutionary time scales.The Metagenome Program combines … and viral activity, transcription regulation, and noncoding RNAs in microbiomes. The insights from this work have the …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma factor targets, and have expanded the … & compatibility, and signatures of horizontal gene transfer. … The SMC provides complete sequence and …
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