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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … analysis, and interpretation of sequence, metabolomics, and functional genomics data types as well as in …
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Plant-Microbial Interactions Group
… influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … model system by identifying phages and characterizing this multipartite phenomenon in additional plant and bacterial … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Publications
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Multi-omics profiling of the cold tolerant Monoraphidium minutum 26B-AM in response to abiotic stress
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also a really … there’s hot spots of really potent antibiotics. There’s cold spots where the pathogens are taking over and …
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Natural Prodcast Episode 16: Marcy Balunas
And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … garden ant as well as the American honeybee. And so I have multiple opinions which I’m never short of but. In terms of … you try to tackle that? Would you do that through metabolomics or sequence or both or–?  MARCY: So we do so much more …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … ACADEMIC, NON-PROFIT or COMMERCIAL PROPOSALS with MULTIPLE COLLABORATORS: The submitting researcher’s home …
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FICUS
… researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … And he tells us about forthcoming efforts in paired-omics data sets and seeking to interpret function from BGCs. … encoded by them. Well, they had come out over actually multiple decades of time. But still to be able to use those …
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Data Policy
PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … for their planned work.   … For sequencing or metabolomics projects: data are subject to a  one-year embargo .  … use-restricted data. JGI proposals typically include multiple projects of different types which can span several …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride right … amino acid out of solution and stick another amino acid or multiple other amino acids onto it to create a small …
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