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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … , and use the contributor list provided by JGI to determine the authorship list. The intent of the JGI-provided …
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Partnerships: Adopt-A-Genome
… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … microorganisms, by sequencing large populations of bacteria and archaea in their natural environments using …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find …
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Publications
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … that I would say are are still fairly unexplored in terms of their natural products chemistry, and he has a … it’s a little intimidating. DAN: Unfortunately Alison is no longer with us… She’s alive! She just doesn’t work for JGI …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… that you know what you’re talking about. ALISON TAKEMURA: A long time ago. DAN UDWARY: But when I picture these, I … want to find, things that are of interest. And usually, in terms of bacteria and secondary metabolism, those things … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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Long-Term Persistence of Three Microbial Wildfire Biomarkers in Forest Soils
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in … and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … sequenced genomes in the public domain, the bulk of which belong to only three phyla. The Woyke group uses single-cell …
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Natural Prodcast Episode 17: Cassandra Quave
… reading the book, because it was this labor of love for so long. And I’m like, god, no one’s going to read this. And … in a tropical ecology course, that I first encountered the term “ethnobotany.” And for the audience, ethnobotany is the … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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