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Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … of bacteria and archaea in their natural environments using single cell approaches. This includes linking strain-level genetic …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … allowing connections between all systems to maximize the impact of user research. The crucial elements are  proposal …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and also as a …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … the coding potential to find novel functions that may impact microbiome structure and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … to correlate two or more factors that will actually have an impact to bring positive or negative into fitness. So while … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … Bowers RM, et al. (2017) Minimum information about a single amplified genome (MISAG) and a metagenome-assembled … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … technology in order to enhance the quality of single-cell genomes and directly link functional information with …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … Accessing Resources at Multiple DOE User Facilities with a Single Proposal describes the resources available from the …