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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts to do so, and JGI … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Publications
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … analysis Expose students to peer review process, conveys responsibility and accountability Promote utilization of JGI …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship … Sample Metadata form Sample metadata is collected via spreadsheet or directly via a web interface prior to …
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Products
… preparation, DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and deliverables as well as …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … 9. doi: 10.1038/s41587-020-0718-6. Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … transferred. Things shift between even different genus. And so often, secondary metabolism genes don’t look …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … into maybe the “easiest” organism to grow within that same genus. And so that’s what we’re trying to do right now is … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … and Appendix. An Appendix identifies the type of work or specific proposal to be covered under the Agreement. The … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range of … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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FICUS Overview
… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical … Following DOE approval, project managers negotiate project specifics with PIs (including JGI scientists as needed), and …
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