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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for …
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Publications
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Plant-Microbial Interactions Group
… pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants … how plant cells respond to low nutrient conditions (low nitrogen or low phosphorus), and how cell identity impacts … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …
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Dynamic nitrogen fixation in an aerobic endophyte of Populus
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Fungal & Algal Program
Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the … in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or pathogens) and as the most …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Institutional User Agreements
… approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Metabolomics Technology Group
Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is understanding the distributed and dynamic metabolite networks of environmental microbes and …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … just depends on lifestyle.  ALISON: Okay. It’s such a dynamic part of their lives. Sounds like. DAN: Literally, … bacteria provide nutrients for the plant mainly by fixing nitrogen. Getting nitrogen from the environment so that the …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of … detailed characterization of model systems to explore the dynamics of microbial ecosystems and their evolution. The …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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