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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … The program also collaborates with isolate collections to complete large-scale sequencing projects, including 10,000 … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … what looked to be novel biosynthetic gene clusters, like completely new things that we haven’t seen before. And so …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … proposals within the focused topic areas that can be completed on an accelerated timeline as compared with the … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …

The Metagenome Program uses advanced sequencing technologies to … assembly and binning have enabled reconstruction of complete or near-complete population genomes directly from … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… in love with the bacteria part of that. And so I decided to completely change gears and go and do a postdoc with a woman … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … for bioenergy and bioproduct applications. The program has completed over 70 projects, including gene synthesis, … the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …