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… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… research project are appropriately recognized and credited for their work, while also adhering to the authorship … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using public …

… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical Minerals and Materials proposal call . This represents a unique opportunity for researchers to request the capabilities and expertise of … capabilities, they then ship samples—such as DNA and RNA for sequencing—to JGI. Users are responsible for covering …

… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … critical energy and environmental challenges. Through innovative research in synthetic biology, the program enables the … scientists to drive innovations that align with DOE's missions. …

… DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal …     2,208     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … 8734 2005 28 33.63 8400 8760 * Reflects actual data due to analysis beyond fiscal year-end close. …

… technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, … to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, the … diversity and metabolic potential, with implications for energy production, environmental sustainability, and …

… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … interactions, evolution, and adaptation, ultimately informing strategies for environmental monitoring, …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted …

…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National … staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … organisms. We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as …

… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the … provides customized analysis, the JGI also participates in publication of results. …