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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … insights from sequence data, employing IMG data and tools for comparative analysis, visualization and …

… innovative screening technologies and computational tools that enhance biofuel production and biosystem design. … enzymes and pathways vital to DOE missions. Using bioinformatics tools and genome portals, we study … IMG/M system serves as a community resource for comparative analysis and annotation of all publicly available genomes …

DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal …     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … 8734 2005 28 33.63 8400 8760 * Reflects actual data due to analysis beyond fiscal year-end close. …

… diversity and metabolic potential, with implications for energy production, environmental sustainability, and … evolution. The Program focuses on developing computational tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … available genomes from three domains of life. It provides tools for analyzing the functional capability of microbial …

… and resources. Our vision is to lead genomic innovation for a sustainable bioeconomy. ALL PROPOSALS must support the … DNA design and synthesis, metabolomics and computational analysis that enable systems-based scientific approaches to … Understand the assembly, function, and the behavior of microbiomes and manipulate them to facilitate microbial …

… accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … Environmental Sample Archives, Applying JGI and EMSL Omics Tools introduces the NEON resource, a network of field …

… and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … in there to find new antibiotics. And, as many projects in bioinformatics, what, something that was born out of …

… advanced mass spectrometry techniques and computational tools, the program supports foundational research related to … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … a combination of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity …