Search

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, …

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … E.M. & Dubilier, N. Symbiosis insights through metagenomic analysis of a microbial consortium. Nature 443, 950-5 … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

… is to develop a deeper understanding of microbial community assembly and microbial interactions, including … tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the …

… data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for the remainder … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … JGI places no further restrictions on data availability or utilization except as outlined in the Publication Policy. … …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, … often the things that suffer first when it comes to genome assembly. Some of the common biosynthetic systems – like a …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … clusters. And then they sequenced a really nice and good assembly. They were able to assemble a really high quality …

The  Open Green Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of … for very large-scale single genomes, based on the JGI assembly tool meraculous. It is now available for both …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …