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Publication Policy
JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … for your proposal using your proposal's WIP ID (ex. 503582). Click on the correct proposal name on your search …
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Publications
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Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)
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Products
… metabolomics Below is a table of standard product offerings, including a description of the product and deliverables … ), mapping 273/273 Metagenome Cell Enrichments Obtained by physical separation of a biologically relevant unit from … assembly of short-read sequence data, many unordered contigs. Assembly, annotation ( IMG ) 280/298 Microbial …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of Energy Joint Genome Institute, builds … Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed (or about one per student) Seven …
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Sequencing Technologies
The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  …
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Institutional User Agreements
… any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Synthesis
… convert sequence into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for … to validate hypotheses generated from mining genomic data by designing and assembling physical DNA constructs that can … length  Pooled libraries such as sgRNA, promoter or MoClo assemblies … Check out our organism-agnostic CRISPR gRNA …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, … have enabled reconstruction of complete or near-complete population genomes directly from the environment. These …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… the time. DAN UDWARY: All right. So I thought we’d kick things off this time around, talking about a subject that’s … can just mediate so many kinds of interactions. And by understanding them, we can promote the health and … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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FICUS
… beyond what each of these facilities could generate by itself.   Accepted projects must address or be otherwise … to DOE mission is appropriate. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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FICUS Overview
A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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