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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …

Plants are complex organisms that harbor a fantastic diversity … to study this complexity, including single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, yeasts and …

… “Adopt a Genome” is an informal program for faculty to … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

With collaborative user projects, the JGI’s Plant Program delves into … in the DOE Bioenergy Research Centers. The  Plant Gene Atlas initiative develops gene expression catalogs across … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… … Dan Udwary: You’re listening to the Department of Energy … have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is a very raw … types of data, including expression data, use of metatranscriptomics, where you measure gene expression levels of …

The Facilities Integrating Collaborations for User Science … for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

DAN UDWARY: You’re listening to the Department of Energy … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in …