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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … JGI Staff: Upon request, JGI staff will provide Users with a list of contributors and their corresponding ORCiD and relevant …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …
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Publications
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Natural Prodcast Episode 18: A CSP Primer
… DAN UDWARY: It’s been a while, but Natural Prodcast is back … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … amount that they can request. So the minimum request is 100 kb. The maximum request is 500 kb. DAN UDWARY: For DNA …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … tricky problem because secondary metabolism genes are duplications of primary metabolism genes. They have evolved …
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Synthesis
…   The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables … constructs:  Individually arrayed constructs, up to ~150 Kb in length  Pooled libraries such as sgRNA, promoter or …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … The research efforts of the group have concentrated in demonstrating …
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is … Phylogenetic diversity estimates show that the gap between cultivated and uncultivated … gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call … for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … Exploring the fascinating world of giant viruses, which challenge our understanding of viral … Understanding the complex relationships between microbes and …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical Minerals and … for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … Access to the Molecular Foundry and use of JGI capabilities …
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