Publications

Davidson, R. B. et al. (2023) Predicted structural proteome of Sphagnum divinum and proteome-scale annotation. Bioinformatics. 10.1093/bioinformatics/btad511

Chiu, B. K. et al. (2023) Membrane lipid and expression responses of Saccharolobus islandicus REY15A to acid and cold stress. Frontiers in Microbiology. 10.3389/fmicb.2023.1219779

Shi, Z. J. et al. (2023) Maast: genotyping thousands of microbial strains efficiently. Genome Biology. 10.1186/s13059-023-03030-8

White, C. et al. (2023) Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios. Frontiers in Microbiology. 10.3389/fmicb.2023.1243410

Zhao, Y. et al. (2023) Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.. Molecular Plant-Microbe Interactions. 10.1094/mpmi-07-23-0091-r

Zhong, Z. et al. (2023) Lower viral evolutionary pressure under stable versus fluctuating conditions in subzero Arctic brines. Microbiome. 10.1186/s40168-023-01619-6

Sahu, N. et al. (2023) Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria. Nature Microbiology. 10.1038/s41564-023-01448-1

de Oliveira, C. M. et al. (2023) Trichoderma harzianum transcriptome in response to the nematode Pratylenchus brachyurus. Biological Control. 10.1016/j.biocontrol.2023.105245

Sreedasyam, A. et al. (2023) JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. Nucleic Acids Research. 10.1093/nar/gkad616

Honeker, L. K. et al. (2023) Drought re-routes soil microbial carbon metabolism towards emission of volatile metabolites in an artificial tropical rainforest. Nature Microbiology. 10.1038/s41564-023-01432-9

Lagergren, J. et al. (2023) Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa. Plant Phenomics. 10.34133/plantphenomics.0072

Pavia, M. J. et al. (2023) Genes and genome‐resolved metagenomics reveal the microbial functional make up of Amazon peatlands under geochemical gradients. Environmental Microbiology. 10.1111/1462-2920.16469