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Metagenome
Microbial
Bowers, R. M. et al. (2023) Gone with a trace: cataloguing the disappearing gut microbes. Nature Reviews Microbiology. 10.1038/s41579-023-00968-1
DNA Synthesis
Community Science Program
Takawira, L. T. et al. (2023) Functional investigation of five R2R3-MYB transcription factors associated with wood development in Eucalyptus using DAP-seq-ML. Plant Molecular Biology. 10.1007/s11103-023-01376-y
Genomic Technologies
Villalobos-Escobedo, J. M. et al. (2023) Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites. PLOS Genetics. 10.1371/journal.pgen.1010909
Genomic Technologies
Simirenko, L. et al. (2023) gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes. Frontiers in Bioengineering and Biotechnology. 10.3389/fbioe.2023.1217811
DNA Synthesis
Community Science Program
Lee, S. H. et al. (2023) Identification of 2‑Hydroxyacyl-CoA Synthases with High Acyloin Condensation Activity for Orthogonal One-Carbon Bioconversion. ACS Catalysis. 10.1021/acscatal.3c02373
Genomic Technologies
Metabolomics
Community Science Program
Caddell, D. et al. (2023) Drought shifts sorghum root metabolite and microbiome profiles and enriches for pipecolic acid. Phytobiomes Journal. 10.1094/pbiomes-02-23-0011-r
Metagenome
Viral
Vik, D. R. et al. (2023) MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets. ISME Communications. 10.1038/s43705-023-00295-9
Metagenome
Community Science Program
Pavia, M. J. et al. (2023) BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes. Microbiome. 10.1186/s40168-023-01625-8
Fungal & Algal
Genomic Technologies
EMSL FICUS
Li, J. et al. (2023) Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi. Journal of Fungi. 10.3390/jof9080860
Metagenome
Community Science Program
Zhao, J. et al. (2023) Nitrogen and phosphorous acquisition strategies drive coexistence patterns among archaeal lineages in soil. The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 10.1038/s41396-023-01493-y
Metagenome
Viral
Roux, S. et al. (2023) Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios. The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 10.1038/s41396-023-01468-z
Metabolomics
Harwood, T. V. et al. (2023) BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring. Scientific Reports. 10.1038/s41598-023-40496-9
