Publications
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Metagenome
Community Science Program
Högfors-Rönnholm, E. et al. (2022) Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils. Communications Earth & Environment. 10.1038/s43247-022-00642-z
Genomic Technologies
Secondary Metabolites
Metagenome
Microbial
DNA Synthesis
Community Science Program
Community Science Program
Community Science Program
Community Science Program
Community Science Program
Community Science Program
Seshadri, R. et al. (2022) Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes. Cell Genomics. 10.1016/j.xgen.2022.100213
Genomic Technologies
Community Science Program
Sun, J. et al. (2022) Persistent memory as an effective alternative to random access memory in metagenome assembly. BMC Bioinformatics. 10.1186/s12859-022-05052-8
Microbial
Bioenergy Research Centers
Rostain, W. et al. (2022) Tuning of Gene Expression in Clostridium phytofermentans Using Synthetic Promoters and CRISPRi. ACS Synthetic Biology. 10.1021/acssynbio.2c00385
Genomic Technologies
Metagenome
ETOP
Nuccio, E. E. et al. (2022) HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi. Microbiome. 10.1186/s40168-022-01391-z
Metagenome
Viral
Community Science Program
Lee, S. et al. (2022) Propagation of viral genomes by replicating ammonia-oxidising archaea during soil nitrification. The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 10.1038/s41396-022-01341-5
Metagenome
EMSL FICUS
Noonan, A. J. C. et al. (2022) Metagenome-Assembled Genomes for “Candidatus Phormidium sp. Strain AB48” and Co-occurring Microorganisms from an Industrial Photobioreactor Environment. Microbiology Resource Announcements. 10.1128/mra.00447-22
Secondary Metabolites
Terlouw, B. R. et al. (2022) MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters.. Nucleic Acids Research. 10.1093/nar/gkac1049
Metagenome
Microbial
Selvitopi, O. et al. (2022) Extreme-Scale Many-against-Many Protein Similarity Search. IEEE International Conference for High Performance Computing, Networking, Storage and Analysis. 10.1109/sc41404.2022.00006
Metagenome
Microbial
Viral
Camargo, A. et al. (2022) IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.. Nucleic Acids Research. 10.1093/nar/gkac1037
Metagenome
Microbial
Chen, I. A. et al. (2022) The IMG/M data management and analysis system v.7: content updates and new features.. Nucleic Acids Research. 10.1093/nar/gkac976
Microbial
Community Science Program
Community Science Program
del Carmen Montero-Calasanz, M. et al. (2022) Genotype–phenotype correlations within the Geodermatophilaceae. Frontiers in Microbiology. 10.3389/fmicb.2022.975365
