Publications

Doud, D. F. et al. (2019) Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere. The ISME Journal: Multidisciplinary Journal of Microbial Ecology. 10.1038/s41396-019-0557-y

Schuler, R. E. et al. (2019) Toward FAIR Knowledge Turns in Bioinformatics. IEEE International Conference on Bioinformatics and Biomedicine. 10.1109/bibm47256.2019.8982988

Wilken, S. E. et al. (2019) Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi. Metabolic Engineering Communications. 10.1016/j.mec.2019.e00107

Kelly, W. J. et al. (2019) Occurrence and expression of genes encoding methyl-compound production in rumen bacteria. Animal Microbiome. 10.1186/s42523-019-0016-0

Khosravi, C. et al. (2019) Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network. BMC Genomics. 10.1186/s12864-019-6235-7

Daly, P. et al. (2019) Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens.. Applied and Environmental Microbiology. 10.1128/aem.01828-19

Schada von Borzyskowski et al. (2019) Marine Proteobacteria metabolize glycolate via the β-hydroxyaspartate cycle. Nature. 10.1038/s41586-019-1748-4

Sieber et al. (2019) Unusual Metabolism and Hypervariation in the Genome of a Gracilibacterium (BD1-5) from an Oil-Degrading Community. mBio. 10.1128/mbio.02128-19

Álvarez-Escribano, I. et al. (2019) Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants. BMC Biology. 10.1186/s12915-019-0702-0

Sahib, M. R. et al. (2019) Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants. Microbiology Resource Announcements. 10.1128/mra.00927-19

LaPierre et al. (2019) De novo Nanopore read quality improvement using deep learning. BMC Bioinformatics. 10.1186/s12859-019-3103-z

Smith, M. W. et al. (2019) Genomic Signatures for Sedimentary Microbial Utilization of Phytoplankton Detritus in a Fast-Flowing Estuary. Frontiers in Microbiology. 10.3389/fmicb.2019.02475