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… The purpose of this policy is to establish communication norms around … while also adhering to the authorship policies of the journal in which the research is published. The JGI has a … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, … analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … diversity and metabolic potential, with implications for energy production, environmental sustainability, and …

… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … samples to the JGI. PI sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need …

… protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here … Tips for High Molecular Weight DNA extraction: … RNA Extraction Protocols: …

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will …