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The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … functional genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization … genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … the auspice statement where indicated. If you use data from 4 or more proposals, include those DOIs in a data …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … directly isolated from environmental samples.  … The IMG/M system serves as a community resource for comparative … and their associated metadata, around the world. … Integrated Microbial Genomes and Microbiomes … Integrated …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … computational tools for analyzing viral fragments via IMG/VR and methods to capture  environmental viral … available genomes from three domains of life, in a uniquely integrated context.  … The IMG/VR system serves as a …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … that — fingers crossed, tenure relying on this — antiSMASH version 1 comes out. The reviewers were not kind to my … of biosynthetic gene clusters. But with all of the other IMG kind of hooks into IMG’s data. IMG being Integrated …

… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The recent updates were approved by the DOE to …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed … of Biosynthetic Clusters , which is a subsection of the IMG data portal , which is a larger portal for microbial …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … a combination of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole genome shotgun sequencing … Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and …