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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …    Authorship Guidelines JGI will provide all users with a list of JGI staff who contributed to their project, …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … The research efforts of the group have concentrated in demonstrating the power of …
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Publications
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Partnerships: Adopt-A-Genome
… faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …
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Identification of mobile genetic elements with geNomad
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be completed on an … provides customized analysis, the JGI also participates in publication of results. …
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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … the need to have a limited and time-sensitive protection of certain types of data to support their use by those generating data. The … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and environmental … the program enables the design and synthesis of complex genetic pathways and biosystems. It The program fosters …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such … candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The “Great Plate-Count …
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FICUS Overview
… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … Previously, researchers had to apply to each facility with separate review schedules and selection processes, … provides customized analysis, the JGI also participates in publication of results. …
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