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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication … interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and …

… cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying … The program provides high-quality, large-scale genomic data to advance microbial research that drives … Novel approaches are being explored to predict microbial lifestyles using AI-driven analysis of such datasets. The …

… in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, …

… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural … Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model systems … NMDC is a community-driven national effort aimed to develop standards, processes, and infrastructure for an integrated …

… as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … mass spectrometry Metabolite annotation based on chemical standards or computational approaches. Relative abundance of … based on feasibility and scientific merit.  Arizona Genomics Institute will produce HMW DNA needed for these …

… components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users …

To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … … to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride …

… focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … insights through metagenomic analysis of a microbial consortium. Nature 443, 950-5 (2006). … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …