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… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … acknowledgment (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, …

… include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of … and comparative analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in … We then investigate the coding potential to find novel functions that may impact microbiome structure and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …

Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … and how changes in metabolism can affect ecosystem functions. The Metabolomics Program focuses on advancing …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … By understanding how microbes contribute to ecosystem functions, the Program helps drive innovations that could …

… genomics research and to help them translate genomic information into biological function.  The emphasis is on … and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily … and track record of the applicant.  Learn about the general review process or find details on the internal …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent for … sequence to biological inference. … Genome sequences of key bacterial symbionts of entomopathogenic nematodes: …

ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … doi: 10.1038/s41587-020-0718-6) The GEM catalog expands the bacterial and archaeal orders as seen on the phylogenetic …

The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …