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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … using long-read sequencing. Exact library types and quality of finished product depend on genome. Selected … For counting: text file of gene counts (mapped against reference transcriptome or de novo assembly), DGE, alignment …

… computational framework. It enables cross-species comparisons, advancing DOE mission-oriented research and … the diversity of the plant kingdom and allow ancestral reconstructions of plant genomes. With the  JGI Plant Flagship … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… nutrient cycling and bioproduct applications.  The team has three subgroups: Synthetic Biology Lab : a user science … group dedicated to user project design, assembly, and quality control Strain Engineering Group : a research & … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … from the GEM catalog (in green) and previously existing reference genomes (in gray). Around the phylogenetic tree, …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … metagenomic sequencing, assembly and binning have enabled reconstruction of complete or near-complete population genomes … and annotation of all publicly available genomes from three domains of life, in a uniquely integrated context.  … …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … JGI portals or outside repositories until the earliest of three points:  (1) publication of the data (including, but …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal … and annotation of all publicly available genomes from three domains of life. It provides tools for analyzing the …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … quorum sensing allows you to do — generally there’s just three components in these acyl homoserine lactone based … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …