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… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa … Phylogenetic diversity estimates show that the gap between cultivated and uncultivated … of which belong to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. …

… Research in the Eloe-Fadrosh group focuses on using … approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . …

… Our research is focused on the discovery and characterization of … We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to … Exploring the fascinating world of giant viruses, which challenge our … possess genomes and particle sizes that rival those of cellular organisms. Giant viruses challenge the traditional …

…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of … automation — and further advancing sequence applications, single cell genomics, biodesign, and metabolomics capabilities.    … An assay used for profiling transcription factor binding …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as improving soil health, … The Microbial Program focuses on using advanced sequencing technologies …

… Microbes drive critical ecosystem functions and affect global nutrient cycling, … constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … mechanisms involved in virus:host interaction and host cell take-over by viruses, and attempts to evaluate …

… The purpose of this policy is to establish communication norms around JGI contributions, ensure … research project are appropriately recognized and credited for their work, while also adhering to the authorship … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … A primary purpose of this project is to bring educators from …

… The Micro-Scale Applications group explores the genetic makeup of … technology in order to enhance the quality of single-cell genomes and directly link functional information with … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics …

… The Facilities Integrating Collaborations for User Science (FICUS) call … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS call with EMSL begin with a Letter of … After an LOI is accepted, the researcher then submits a …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … Scientific Program Product Description Deliverables Cycle Time FY25 Q1  …

… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based … Plant microbiomes hold the amazing ability to influence plant …