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The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … provides insights into microbial diversity and metabolic potential, with implications for energy production, …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … lineages that are important for bioeconomy applications. By expanding our knowledge of microbial functions and … rich data such as inferred host taxonomy, conjugation potential, antibiotic resistance genes, and ecosystem …

… “Adopt a Genome” is an informal program for faculty to … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …

The IMG group owns and maintains integral components of JGI’s production … omics-based scientific investigations. Development and maintenance of the Integrated Microbial Genomes (IMG) data …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … on the backs of people who’ve done a lot of work over the years. We have a pretty good idea of what the different …

Research in the Eloe-Fadrosh group focuses on using … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … discuss available options. Note: In 2021, we conducted an extensive internal product audit to analyze the scientific …

… out every two weeks for a while – so I hope you’ll be listening. But this week, here’s my chat with my boss, JGI … batch of episodes that I did at the SIMB meeting … two years ago? Yeah, it would be two years ago.  NIGEL MOUNCEY: … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

… and collaborators of any given proposal. Third parties (often referred to as “data users”) cannot see this data. … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … multiple projects of different types which can span several years. Projects are defined at proposal acceptance and may …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … S, et al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …