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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function distribution. These …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model … tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling …

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually … or MAGs. So these are genomes that were assembled from metagenomic sequence, metagenomic sequence being taking a …

… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … and then in terms of there’s sequencing an organism by shotgun, which is what we did, we didn’t even sequence the … of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put some of these …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … to predict or just understand better the language of microbial cell-cell communication. And he told us about his … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … take to improve on the data side of things and sequencing analysis side of things to really start to be able to …

And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … done a lot of work learning about how to use statistical analysis to prioritize both to analyze our bigger system … computational skills among biologists JGI CSP Proposal: Metagenomic mining of natural product diversity and …