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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … and sequence and get the information on biosynthetic gene clusters. And I’ll explain all this. So but first, let’s …

Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … a subsection of that called ABC, the Atlas of Biosynthetic Clusters. And at the time, it was a really good resource for … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … is not enough even there. So it’s highly variable. So the conservation depends on the genomic lineage you are looking … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the … associated with plants (mycorrhizae, endophytes, growth promoters, or pathogens) and as the most efficient degraders …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database … figure out, OK, can we find interesting biosynthetic gene clusters in there to find new antibiotics. And, as many …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … see a certain time span within these biosynthetic gene clusters. There’s gene fusion going on, and then I could see … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … unpublished at that point. But people would push out gene clusters maybe once a month at most. Maybe twice a year, a … consortia of microorganisms growing on the walls. They look like– they look like colonies, different colors, all sorts …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …