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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …
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Publications
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Natural Prodcast Episode 13: Francisco Barona Goméz
UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … is, then this is the podcast for you. A lot of this is based on a really great paper that came out in 2020 where … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to … and virus-microbe interactions, over ecological and evolutionary time scales.The Metagenome Program combines … pathways, enabling modeling of microbiomes based on functional traits. These advancements provide new …
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Natural Prodcast Episode 10: A Primer on Genome Mining
UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … families of genes that it searches for and uses a rule-based system that classifies the things that it finds into …
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Microbial Program
… driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … families, and pathways, enhancing our understanding of evolutionary diversification and microbial diversity. Learn … the functional capability of microbial communities based on their metagenome sequence, in the context of …
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Products
DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …
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Viral Genomics Group
… at improving our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Genome‐based evolutionary history of Pseudomonas spp
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … see things that maybe aren’t real, and so it’s thought that based on historical records and weather recordings of the … near this tree and so there was probably some historical evolutionary event where the DNA transferred from the fungus …
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DOE Metrics
… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … PacBio sequencing platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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