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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of … for your proposal using your proposal's WIP ID (ex. 503582). Click on the correct proposal name on your search …
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Cave Thiovulum (Candidatus Thiovulum stygium) differs metabolically and genomically from marine species
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Natural Prodcast Episode 20: Brian Bachmann
… our interview this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he … which includes screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways … has to have a story. And it can be looking for drugs from marine organisms, in which case you get to go to exotic …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed (or about one per student) Seven … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of …
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Publications
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Natural Prodcast Episode 8: Eric Schmidt
… week, we have our conversation with Professor Eric Schmidt, from the University of Utah. I’ve known Eric for a long time … grade list of goals in life: on that list are being a marine biologist and being a chemist, and it’s actually … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… prefers to be known among friends in natural products. He’s from Langebio in Irapuato, Mexico, and an incredibly bright … They produce a large array of different molecular species related– chemically related– but nevertheless we did … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … come from all kinds of disparate environments. There’s some marine. There’s some soil samples. There’s human gut …
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Natural Prodcast Episode 19: Bill Fenical
… real legends of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill is a pioneer of marine natural products, getting into the ocean and looking … ecologists that they needed to consider chemical impact on species interactions, communication, that kind of thing. But …
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Natural Prodcast Episode 15: Katherine Duncan
… studied chemistry, because she switched her degree program from geography to chemistry. So we were both enrolled as … fundamental things, like, are we waking them up? Are they metabolically active and slowly ticking away at these … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Plant Program
… facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to … agricultural productivity. Research spans diverse areas — from understanding how terrestrial plants and phytoplankton … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 1: The Primer, Part 1
Laboratory. Being a User Facility means that scientists from all over the world bring us big problems related to … at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so heterotrophic bacteria. Now, we … I have been in – working in secondary metabolism for almost 20 years now. Which when I did the math, that was a surprise …
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