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With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to … to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … in the DOE Bioenergy Research Centers. The  Plant Gene Atlas initiative develops gene expression catalogs across …

… at   Humboldt Universität zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in …

… the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic …

… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … clusters. So, in the ABC portal here at JGI, ABC being the Atlas of Biosynthetic Clusters , which is a subsection of …

Plants are complex organisms that harbor a fantastic … is the modulation of their bacterial host to colonize plant roots, as with Arabidopsis thaliana. Using a coupled … We will eventually construct a bioenergy plant single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium …

… have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is a very raw … called “disease suppression”, where the microbiome of a plant, so the bacteria living on and inside the roots are protecting the plants against pathogens. So …

… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week … curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … in bacteria as well. Yeah. DAN UDWARY: Yeah. Yeah, common root.  ALISON TAKEMURA: And so is that how your ethnobotany …

… and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of … of the paper. Auspice Statements Including appropriate tracking numbers is critical to facilitating the tracking of …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … conversation with Aaron Puri. He is an Assistant Professor from the Chemistry department at the University of Utah, so … DAN: Almost like you know that there is. AARON PURI: It’s a planted question Dan. Yeah. So overall I think what we’re …

… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. … QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage …