Search

The Fungal & Algal Program explores the vast diversity of fungi … large-scale sequencing efforts that survey the vast phylogenetic and ecological diversity of fungi and algae, examining … is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, from an international …

Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data generated … team reported that the algorithm was over 95% successful at classifying the fungal genomes Support Vector Machine …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them …

The Fungal & Algal Program Advisory Committees is chartered by the Science …

… conversation with Aaron Puri. He is an Assistant Professor from the Chemistry department at the University of Utah, so … that I’m fascinated to learn more about. He works with methylotrophs, which are a group of carbon-fixing bacteria … probably not the easiest to describe. DAN: We’ll put a figure in the show notes. AARON PURI: Awesome. Thank you. …

… products and the science and scientists of secondary metabolism. Welcome back for our second season of Natural … genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find … it has a really interesting biosynthetic pathway because fungal genes are cool. And if you like fungal genes, you …

… prefers to be known among friends in natural products. He’s from Langebio in Irapuato, Mexico, and an incredibly bright … Yeah, so any metabolite, produced by bacterial or fungal metabolism by microbes, will have a functional role. … that each one metabolite could have, then you could figure out that there are metabolites that will rely their …

… in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for …

… in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent … learning approaches in data analysis and interpretation is creating new opportunities for breakthrough … Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in …

… that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is … fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. Myco-Ed has:  ~50 … selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ iNaturalist …

… that project was actually to look at the genome and to figure out, OK, can we find interesting biosynthetic gene … of thousands or more than a million gene clusters, this is computationally too expensive. So the middle road that … are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this case they worked on a …

… on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and …