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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … fully capture microbial and viral diversity, leading to a better understanding of microbial communities and ecosystem …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, … Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding of … provides high-quality, large-scale genomic data to advance microbial research that drives sustainable solutions in …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to … encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … up-to-speed with some of the latest developments in microbial genomics, metagenomics, and computational biology, …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … those results heading? Toward an application, toward just better understanding fungal biosynthesis? DAN UDWARY: Yeah, … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …
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Viral Genomics Group
… parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … of viral infections. The Viral Genomics Group is hosted within the Environmental Genomics group . Research Team … approaches, including especially metatranscriptomics, to better highlight and ultimately predict the main viral …
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Plant Microbial Interactions Group
… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered … genetics (RB-TnSeq), and computational genomics to better understand the plant-associated terrestrial world. …
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New Lineages of Life Group
… discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … Cataloging Earth's microbial lineages through advanced genomic techniques and … reveal new lineages and functional capabilities in the microbial world. …
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Products
… Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial … DNA (no iTag sequencing) Assembly, annotation ( IMG/M ), binning 154/217 Metagenome Standard Draft Short-read …
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FICUS
… applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be completed on an accelerated timeline as compared with the standard CSP projects. In addition, they must … of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides …
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … things so that when we talk to other scientists, we have a better idea of what’s going on and what the context for … right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so …
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