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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have … Through the JGI’s Community Science Program , JGI sequenced and assembled near-complete genomes of P. hallii … complete) and P. hallii var. filipes (94.8% complete) and resequenced a host of natural collections from across the …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned …
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Green Algae Reveal One mRNA Encodes Many Proteins
… Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single protein. Gene expression in eukaryotes was long held … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… This year’s list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three … .  ID’ing RNA viruses with ease : Searching for RNA sequences within a database can be like combing for the …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the … to learn more about the program's areas of focus, major initiatives and more.  … BA/MS in Biophysics, Moscow Engineering Physics Institute, Moscow, Russia PhD in Molecular …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold vast potential for …   The Science Hydrothermal vents are ocean-floor openings in the Earth’s crust that emit hot, mineral-rich water. … and DBI-2047598 to K.A. We thank the Department of Energy Joint Genome Institute (Community Science Program award 339, …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … learning models that predict biological traits from DNA sequences. The study also confirmed that mitochondrial and …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful platform … genome assembly, researchers offer a gapless end-to-end sequence of complete chromosomes. Auxenochlorella solves a … supported for his work on  Auxenochlorella genome sequencing and assembly in Berkeley, in part, through the …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … development of novel computational tools to identify virus sequences, the design of new experimental approaches to link … B.S. in Microbiology, Université Blaise Pascal, France M.S. in …
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