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Training the Next Generation of Talent
… DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … for building and maintaining cells through the use of deep-sequencing technologies. The internship program was born out … the opportunity to gain hands-on experience at a major sequencing center.” The third member of the internship …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … out to characterize the transcriptome – the complete set of RNA molecules transcribed from all the genes within a … comparative transcriptomics. *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. This year, a new … striving for sustainability in lab spaces as well as offices. These efforts dovetail into sustainability … services,” Fulton said. These emissions come from the whole lifecycle of materials used — from their creation to their …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … by an international consortium. With the genetic code of sugarcane, researchers were able to map the location of … sugarcane was published as a step forward in this effort. Sequencing and assembling the genome required a custom …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other … bioremediate toxic substances has led to the development of cost-effective environmental cleanup strategies. Summary …
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Charting Progress toward Professional Goals
… from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help inspire and train the next generation of STEM professionals. Students can apply for internships …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish … hypersaline Antarctic lakes. The Impact By collecting and sequencing dominant haloarchaeal sequences from six … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Axel Visel
… Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … methods for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic switches implicated in developmental …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant under standard conditions. As described in a recent issue of mSystems , scientists found that adding salt to the … salt triggers this metabolic shift, the team combined RNA sequencing across multiple time points with Cappable-seq, a …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… As part of the ongoing partnership between DOE JGI and UC Merced to … Research Symposium , held February 6 at the University of California, Irvine, Cristhian and Bryan were among 5 UC … “It is a beautiful thing, that our young campus earned 25% of the research awards,” said Jesús Cisneros, director of …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … from greening disease. You’ve probably never heard of trifoliate orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary cousin of the  Citrus genus, which gives us lemons, kumquats, …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples of polycistronic … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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