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Gotta Catch 'Em Gall
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The JGI announces 2024 awardees for our Community Science Program annual call
… Matthew Hudson, Megan Keller and Julia Kelliher; [below] Vassili Kouvelis, Seppe Kuehn, Tesfaye Mengiste, Egbert … Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, … and Functional Genomics calls, here on our website . See below for the full list of 2024 CSP Annual Call awardees. …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the … giant assembly from Lake Mendota. In this episode: the software evolution that made metagenome assemblies like this …
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Gene Expression: From On-Off Switch to Dial
… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene expression allowed researchers to identify variations of essential genes … from a National Defense Science and Engineering Graduate Fellowship. The work conducted by the U.S. Department of Energy …
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … detected in samples collected by Stephen Quake’s team at Yellowstone National Park’s Obsidian Pool hot spring. The … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 …
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2025 Progress Report
… to advance biotechnology. Mission  As a U.S. Department of Energy Office of Science user facility supported by the Biological and …
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The JGI Data Portal: Improving User Experience
… from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten … Engineering Group. “Our team’s ultimate goal is to allow scientists to search for specific types of data across …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal waters and sediment with … at this stage without the internship and mentorship that followed. I especially want to emphasize the inclusive, …
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of Oak Ridge National Laboratory and Elizabeth “Lizzy” Wilbanks of the University of California, Santa Barbara. They join …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … the JGI’s home at Berkeley Lab, as representatives highlighted the benefits of this collaboration.  JGI Director … that they can deliver these programs to our students.”   Following this, several internship program committee members …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in plant roots. They play … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … challenges. In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel … cell (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an …
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