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The fungus that made itself at home
… to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of Oslo … Serpula species, S. himantioides from Europe, that was sequenced and analyzed by the JGI. The researchers found … to harness other woody substrates other brown rots could access. While S. lacrymans var. shastensis has a similar …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… North America that has been the target of extensive natural sampling and field experiments due to its potential for … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team … a changing future. Switchgrass has multiple naturally occurring ploidy levels, called cytotypes, across the …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … participating teams the opportunity to either jumpstart acceleration or optimize their code on GPUs. While the  OLCF … data and has a strong reputation in the community,” said JGI Chief Informatics Officer Kjiersten Fagnan of the …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… a recent issue of mSystems , scientists found that adding salt to the growth medium caused Streptomyces coelicolor to … broadly applicable. The findings hold the potential to accelerate development of bio-based manufacturing processes … The team also identified previously unknown promoter sequences within these gene clusters, offering new …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… Serve the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of … lead genomic innovation for a sustainable bioeconomy. To accomplish this vision, an updated mission statement for the … getting, managing our people and resources responsibly,” said JGI Director Nigel Mouncey. “In creating or …
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Alabama A&M Interns Access An Abundance of Knowledge
… In 2024, the DOE Joint Genome Institute and Alabama A&M … : The best part of being a JGI intern has been just the accessibility to an abundance of knowledge. There’s so many …
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Access to Rock Star Scientists
… Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The students’ research … presentations on their work delivered during the 5th anniversary celebration of the internship program. Candace Cole, UC … questions about all kinds of topics. It’s amazing to have access to rock star scientists who have done the …
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Team Science Reveals Important Protein in Poplar
… x-ray bioimaging experiments were conducted to study iron accumulation and cell wall structure in the poplar plants … National Laboratory (BNL). The Fe deprivation RNA-seq (proposal:  10.46936/10.25585/60001386 ) was conducted by the U.S. Department of …
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Supercharging SIP in the Fungal Hyphosphere
… between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for … communities, with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope … to the process. This automation lets researchers study more samples and provides better resolution by splitting the DNA …
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JGI at the AGU Fall Meeting
… PT (online) Town Hall on the role of user facilities in accelerating research and tips for submitting successful proposals: Collaborate With a U.S. DOE User Facility: Learn About … User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno Kasak, …
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Extracting the Secrets of Secondary Metabolites
… Short Palindromic Repeats) is the leading tool for accurately editing genomes, its effectiveness has … in overcoming this obstacle when it hit the scene in 2019. Now, that power is poised to grow exponentially by … pairing proved to rapidly confirm enhanced production of 22 metabolites from six biosynthetic gene clusters. One of …
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Forming Scientific Connections and Building Community
… Watch the short video here to see what they had to say about their experiences and what they’ll take with them … also mentioned what they loved about their internship. Efosa Omorogieva : “The entire experience of living in another … represent UC Merced. The research I am working on is very cutting edge and I am happy to be a part of a positive …
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