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Secrets of the Needles: What Microbes do on Conifer Leaves
… leaf surface. More specifically, they found that microbial community composition and functional potential varied across … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Office of Science’s Biological and Environmental Research program because of its relevance to understanding the …
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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of … several plant genome projects through the Community Science Program. As a UEC member, he’s interested in finding ways to … ERCs. She’s also interested in developing or improving bioinformatics tools that can help with dataset analysis, as …
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Team Science Reveals Important Protein in Poplar
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … to produce desirable traits.  Partly enabled by the JGI  Community Science Program New Investigator program , BNL scientists focused on … ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, and is supported by the Office of Science of …
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Three Join the JGI User Executive Committee
… The JGI User Executive Committee (UEC) recently welcomed three new … to make recommendations to best support the JGI user community. Schadt is an environmental microbiologist at ORNL … as served on review panels for the JGI Community Science Program (CSP) proposals. He  brings experience …
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Operating Expenses
… Office of Biological and Environmental Research (BER), a program within the DOE Office of Science. …
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A More Intuitive Phytozome Interface
… been under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST … bookmarked v12 links (e.g., to gene reports and organism information pages) will be seamlessly forwarded to Phytozome v13. Below are some answers to Frequently Asked Questions about the transition from …
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Webinar: MycoCosm Tutorial
… the organism’s ecology, mostly based on literature and user community inputs. We also have the potential to create … – reach out to us. 3.  Q: Can you use NCBI taxonomy information to search your interactive tree? A: Sure, if you … (see video on comparative tools) 5.  Q: Is there any programmatic access to the portal? Or any data and metadata …
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JGI Advisory Committees Code of Conduct
… transparently, and ethically; Act on behalf of the JGI user community rather than personal agendas; Treat all other … Nick Everson, Deputy of Operations Kjiersten Fagnan, Chief Informatics Officer Len Pennacchio, Deputy of Genomic Technologies Axel Visel, Deputy for Science Programs Tanja Woyke, Deputy of User Programs …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how … to the Facilities Integrating Collaborations for User Science (FICUS) Call Karolina Michalska , Advanced … Laboratory: “Advanced Photon Source Capabilities for FICUS Program” Sabeeha Merchant , University of California, …
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Viral Genomics Group
… as metagenomics and metatranscriptomics provide invaluable information on virus diversity and activity in microbial … annotation and functional prediction for phage proteins user-friendly integrated pipelines (MVP) and databases … Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG). …
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SPRUCE-ing Up Science
… the DOE Joint Genome Institute (JGI)-UC Merced internship program, Lawrence is now a postdoctoral researcher at the … despite global warming.  At ORNL, Lawrence brings a bioinformatics expertise, a combination of biology and computer … to develop a tool that leveraged machine learning to help users determine which computer program would best serve …
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How Maize Makes An Antibiotic Cocktail
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  Community Science Program . And the work is part of a  larger CSP Functional … National Science Foundation Plant-Biotic Interactions Program (grant no. 1758976 to E.S. and P.Z.) for …
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