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A Shrubbier Version of Rubber
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Supercharging SIP in the Fungal Hyphosphere
… it. The isotopes are incorporated into the DNA of specific microbes who consume the labeled food or water. Later, their … which microorganisms used the labeled substance and which microbes did not. This is normally an arduous wet lab … the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work conducted by the U.S. Department of Energy …
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2025 NeLLi Symposium
Natarajan Google Olga Zhaxybayeva Dartmouth University … Metagenomic and single-cell sequence data have provided a … Dartmouth University See full agenda at the bottom of this page. … Check back for information on venue and lodging.  … … below is as follows:  100% Refund upon request prior to 08/31/2025 50% Refund upon request prior to 10/31/2025 No …
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Plant Pan-Genomics Comes of Age
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Viruses Reprogram Cells into Different Virocells
… infections cause significant metabolic changes in marine microbes, the answer is no. They refer to the infected … changes they’ve undergone. The Impact The number of microbes in, on, and around the planet is an astronomical … Research and operated under Contract Numbers DE-AC02–05CH11231 (JGI) and DE-AC05–76RL01830 (EMSL). This work was funded …
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JGI Early Career Researchers Featured in mSystems Special Issue
… article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more targeted approaches to reconstruct individual microbes in an environmental sample beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
Oh, the magical world of the cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy plant cell … paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists …
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Clades of huge phages from across Earth’s ecosystems
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Uncovering Novel Genomes from Earth’s Microbiomes
… small fraction of Earth’s microbial diversity. Because most microbes cannot be cultivated under laboratory conditions, … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … BGCs in  IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to this JGI Natural Prodcast episode on genome …
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Danielle Goudeau
… flow cytometry protocols for targeted recovery of specific microbes. …
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Natural Prodcast Episode 12: Nadine Ziemert
… product reports on the evolution of genome mining and microbes with Mohammad Alanjary and Tilmann Weber to be a … all these 120 genomes, and each of them have– I don’t know– 30 gene clusters or so. So I think I spent two years only … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot of …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… to bioremediation efforts for decades. Identifying resident microbes that can help bioremediate toxic substances has led … Science Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  … understand the ERD process.  … The work (proposal:  10.46936/10.25585/60000717 ) conducted by the U.S. Department of …
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