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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… viruses — to support scientists around the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … as a Nature Microbiology study that leveraged population genomics to investigate archaeal hitchhikers and found that, …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … over 1,000 metagenomes and established standardized sequencing protocols so that researchers could compare … also funded under the RC-SFA at PNNL by DOE BER ESS. Metagenomic and metatranscriptomic sequencing was performed at …
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A Plant Root Atlas for Tracking Developmental Trajectories
… developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Dan Rokhsar
… 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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JGI-USCCN Strain Sequencing Opportunity
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Jane Grimwood Named HudsonAlpha Genomics Chair
… who has been appointed the Loretta Purdy Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! … Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library Construction … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements … value to the other commonly used culture-independent sequencing approaches including amplicon and metagenomic …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida … researchers walked students through the processes of DNA sequencing, metagenome assembly, and even an introduction to … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … “Now with these new tools — metatranscriptomics, RNA sequencing of soil RNA — we can access — ‘What are they …
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