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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have … derivatives of natural products.  ALISON: Like such a large diversity can have similar effects, I think is also really …
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The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants
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Jeremy Schmutz
Nucleic Acids Res . 51, 1–24.Lovell, JT et al. 2021. Genomic mechanisms of climate adaptation in polyploid … species and their impact on cotton improvement. Nature Genetics 52: 525-533. Lovell, JT et al. 2018. The genomic … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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Dan Rokhsar
… 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … the Physics Department and in 2002 he became a Professor of Genetics, Genomics and Development after his research … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … for tuning this symbiosis. “Those are great candidates for genetic engineering. Our hope is that the community at large … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Root Exudates Alter the Expression of Diverse Metabolic, Transport, Regulatory, and Stress Response Genes in Rhizosphere Pseudomonas
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … developed to the point that you could understand the genetics of secondary metabolism, it became possible to do … of biology. You know, I’ve personally been able to work in genomics, in protein structure, in synthetic biology, …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … sample, or a rumen sample, you’re going to find beautiful diversity.”  Within that diversity of bacteria and fungi, … standards.  A year later, her team used proteomics, genomics and transcriptomics to discover another advantage …
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Calculating the Costs of Multiple Switchgrass Gene Copies
A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … previous study conducted by our research team surveying the genomic and phenotypic diversity across the natural range of … of switchgrass and is a key component in providing genetic variation available for selection to improve biofuel …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … tool called geNomad that identifies and classifies mobile genetic elements based upon their gene content and their … as a Nature Microbiology study that leveraged population genomics to investigate archaeal hitchhikers and found that, …
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Filling in the Plant Tree of Life
What if we understood plants and how they adapt to their ever-changing … crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
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