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Francis Martin
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The … and analysis, the researchers identified other bacteria and microbial processes that support PCE biodegradation. The results demonstrate that it takes a (microbial) community to clean up a Superfund site. The …
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Fishing for Novel Cellulose Degraders
… characteristics. When they tested the screen method on a microbial community from geothermal hot springs, they … known to be key contributors to the planet’s biogeochemical cycles, but the vast majority remains uncultivated and … (LDRD) entitled ‘Tackling microbial-mediated plant carbon decomposition using “function-driven” genomics’. …
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Natural Prodcast Episode 11: Marnix Medema
IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial … effect is gone. You can transplant the effect by taking the microbial fraction out of one soil, transplanting it into … assemble a really high quality metagenome of the endosphere microbial communities for all the bacteria that are living …
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Microbial Genomics & Metagenomics (MGM) Workshop
Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: … is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows …
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Héctor García Martín
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Matthew Kellom
Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial communities living in hard-to-reach places that … are of particular interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic … can thus have significant impacts on the global nutrient cycles regulated by their hosts. For example, microbes that … ecosystems. Summary Microbes drive the energy and nutrient cycles that fuel the planet, and viruses control them …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among … with their host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, California, …
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JGI@25: From Life at the Extremes to Editing Genomes
Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense … has resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated … Cell. 2019 Feb 21;73(4):727-737.e3. doi: 10.1016/j.molcel.2018.12.015. Harrington LB et al. Programmed DNA destruction …
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2025 NeLLi Symposium
… discoveries toward the evolution of cellular complexity and microbial symbiosis.  This is a continuation of the previous … and the function of candidate lineages in biogeochemical cycles and beyond, as well as microbial symbioses. We aim to foster discussions centered …
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JGI@25: Using Team Science to Build Communities Around Data
… of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … The Open Green Genomes Initiative is the product of a 2018 Community Science Program proposal from James …
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