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Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
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Kjiersten Fagnan
… Research Division. As a postdoc, her research focused on stable and accurate computational methods for … Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on supercomputing … she presented work related to distributed data and workflow management.  …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single … Exploring the fascinating world of giant viruses, which challenge our understanding of viral complexity …
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Workforce Development & Education Outreach
… Learn more about internship programs we work with:  …
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Meeting Code of Conduct
… participant. We invite all those who participate to help us create safe and positive experiences for everyone. We are … or other online media. Following a Code of Conduct allows us to create the best experience possible for all attendees. … fellow participants. Alert staff if you notice a dangerous situation, someone in distress, or violations of this …
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IMG/M: a data management and analysis system for metagenomes
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Applying Viral Genomics Expertise to Understanding the Human Virome
… and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … the regulation of global nutrient cycles. The JGI’s latest strategic plan (download a copy  here ) describes how … center for the HVP ," is related to developing an organizational hub for the program, to organize and manage …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of … produced by groups of genes known as biosynthetic gene clusters (BGCs.) As reported in the recent Database issue of … and contig sources.  The Impact Secondary metabolites are useful in a variety of fields including biotechnology, …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… viridis), a small model grass with a short lifecycle that uses a carbon fixation process known as the C4 pathway, … C4 crops, as are the candidate biofuel feedstocks Miscanthus and switchgrass.  Innumerable road trips and hundreds of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and expertise. These collaborations have yielded numerous, high-quality outputs, such as data, publications and …
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Genome organization and botanical diversity
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Data Ecosystem
… partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. Linking the … and help unravel these complexities  This ecosystem serves users better in the following ways: Data integration is …
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