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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… invited speakers shared how research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new … applications of their genomics and multi-omics work. Recordings and recaps of all three keynote talks follow, starting … she added that phenazines are “keystone metabolites,” and by understanding what these metabolites do in nature and …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development … (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE Joint Genome Institute, Dr. …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and … of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics as “true pioneers in their fields … to identify a gene related to seed dispersal in wild populations for the first time. I-Min Chen ,  Natalia …
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Understanding Wildfire Recovery, Starting in Soil
… at microbial genomes across a spectrum of burned soils. By connecting microbial genes with functions useful for … a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, … The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating Collaborations for User …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic … publicly available collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full … Additionally, 40 percent of the proposals were submitted by researchers who had not been a primary investigator on … efforts appear to be redistributing water availability. By sequencing the millet rhizosphere and endosphere communities …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a … at recycling the abundant miscellanea of their surroundings. Case in point: for us, the smell of the ocean simply … done the synthesis, metagenome mining, all the way from sequencing to functional characterization, and a project …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint … Ian Blaby on Google Scholar Grosjean et al ., A hemoprotein with a … in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool for … 11. 2023 Liu et. al., Bacterial genome editing by coupling Cre-lox and CRISPR-Cas9 systems. PloS one. 15: …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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