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JGI@25: Building a Better Bean
… of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the … and researchers across many different labs to be able to sequence a genome.” Since the paper was published in 2014, …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… genome assembly, researchers offer a gapless end-to-end sequence of complete chromosomes. Auxenochlorella solves a …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell … of these approaches. One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… the research consortium aims to generate over a terabase of sequence. “We are thrilled to support this year’s CSP …
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Ian Blaby
… with a view to developing a deeper understanding of sequence-based gene function. … tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes. …
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New and Improved: Eucalyptus Reference is Now Accessible
… using advanced technologies to reconstruct the complete sequences of individual chromosomes. The team describes the … hypothesizes the difference might not be due to repeated sequences, but rather the more accurate assembly of regions …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be … diseases are well known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of … researchers helped develop the overall experimental design, sequenced the RNA from nearly 400 root and leaf samples and …
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Doubling Down on Known Protein Families
… the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists … artificial intelligence to decode the language of protein sequences and obtain hints of their possible functions. Yet … efforts were limited to the realm of already-known protein sequences.  “In this endeavor, we have not only ventured …
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Viral Genomics Group
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A Collaboration to Improve Plant Genome Annotations Across Species
… Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to make inferences about the biogeographic … giant virus genomes reconstructed from environmental sequences is still challenging and even with this study we …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… community able to not just analyze but also create DNA sequences mimicking an array of microbial life. By … is capable of discovering and modelling complex biological sequences such as biosynthetic gene cluster structures. … to predict the biological meaning and relevance of new sequences. It can generate novel sequences based on the …
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